3OK7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3OK7_001 | 1/B/29:34 | No text annotation | ||
| HL_3OK7_002 | 1/B/77:83 | GNRA | geometric HL_4V9F_036 HL_34789.6 | |
| HL_3OK7_003 | 1/B/92:97 | GNRA | geometric HL_4LFB_028 HL_34789.6 | |
| HL_3OK7_004 | 1/B/135:140 | GNRA | geometric HL_5UZ6_001 HL_34789.6 | |
| HL_3OK7_005 | 1/B/165:173 | No text annotation | geometric HL_1U9S_003 HL_87268.4 | |
| HL_3OK7_006 | 1/B/187:192 | GNRA | geometric HL_4LFB_024 HL_34789.6 | |
| HL_3OK7_008 | 1/B/284:289 | GNRA | geometric HL_4LFB_028 HL_34789.6 | |
| HL_3OK7_010 | 1/C/36:41 | No text annotation | geometric HL_3IGI_004 HL_37569.4 | |
| HL_3OK7_011 | 1/C/61:69 | T-loop with 2 stacked bulged bases | geometric HL_6CU1_001 HL_33597.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3OK7_007 | No text annotation | ||
| HL_3OK7_009 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3OK7_001 | 1/B/51:53, 1/B/328:329 | Major groove platform | geometric IL_5Y85_005 IL_48076.10 | |
| IL_3OK7_002 | 1/B/61:68, 1/B/216:217 | No text annotation | ||
| IL_3OK7_003 | 1/B/103:107, 1/B/209:210 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_3OK7_004 | 1/B/108:109, 1/B/205:208 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.5 | |
| IL_3OK7_005 | 1/B/126:127, 1/B/148:151 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_73108.4 | |
| IL_3OK7_006 | 1/B/179:181, 1/B/198:201 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_3OK7_007 | 1/B/227:233, 1/B/261:267 | No text annotation | ||
| IL_3OK7_008 | 1/B/236:240, 1/B/253:258 | No text annotation | ||
| IL_3OK7_009 | 1/C/31:34, 1/C/43:47 | Receptor of 11-nt loop-receptor motif | geometric IL_1NBS_008 IL_87739.2 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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